PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098492.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LSD
Protein Properties Length: 189aa    MW: 20183.4 Da    PI: 8.7763
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098492.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.68.8e-13731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr +L YPrGA++V+CalC+ V
  XP_010098492.1  7 CSGCRSILLYPRGATNVCCALCNSV 31
                    ***********************98 PP

2zf-LSD149.56.8e-164670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y+rGA+sVRC++C+tV
  XP_010098492.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70
                    ************************9 PP

3zf-LSD149.19.4e-1684108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L+YP+GApsV+Ca+C+ V
  XP_010098492.1  84 CGNCRTTLMYPYGAPSVKCAICQYV 108
                     ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.2E-12434IPR005735Zinc finger, LSD1-type
PfamPF069438.9E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-174372IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-1381111IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-1484108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQSQLVCSGC RSILLYPRGA TNVCCALCNS VTSVPPPGME MAQLICGGCR TLLMYTRGAT  60
SVRCSCCHTV NLAPGPNQVA HVNCGNCRTT LMYPYGAPSV KCAICQYVTN VMGNMRVPIP  120
VHRPNGTNST MPSTSAPMPH SQSQTVVVEN PMSVDESGKL AGPGWFGSEK KVGLARPRSF  180
MDRGRAWPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098492.11e-137hypothetical protein L484_025928
SwissprotQ2QMB34e-70LOL2_ORYSJ; Protein LOL2
TrEMBLW9R7M31e-137W9R7M3_9R
STRINGGLYMA08G13630.16e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-66LSD family protein